Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region

Anavaj Sakuntabhai; Sarah Monk; Simon A. Carter; Steven D.  Bryce; Roger  Cox; Louise Harrington; Elaine Levy; Victor L.  Ruiz-Perez; Eleni  Katsantoni; Ahmer  Kodvawala; Colin S.  Munro; Susan Burge; Marc  Larrègue; Gyula Nagy; Jonathan L.  Rees; Mark Lathrop; Anthony P.  Monaco; Tom  Strachan; Alain Hovnanian

doi:10.1086/301794

Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region

Anavaj Sakuntabhai, Sarah Monk, Simon A. Carter, Steven D. Bryce, Roger Cox, Louise Harrington, Elaine Levy, Victor L. Ruiz-Perez, Eleni Katsantoni, Ahmer Kodvawala, Colin S. Munro, Susan Burge, Marc Larrègue, Gyula Nagy, Jonathan L. Rees, Mark Lathrop, Anthony P. Monaco, Tom Strachan, Alain Hovnanian

Research output: Contribution to journal › Article › peer-review

Abstract

Darier disease (DD) (MIM 124200) is an autosomal
dominant skin disorder characterized by loss of adhesion
between epidermal cells and by abnormal keratinization.
We present linkage analysis showing, in four families,
key recombination events that refine the location of the
DD locus on chromosome 12q23-24.1 to a region of
!1 cM. We have constructed a YAC/P1 artificial
chromosome (PAC)/bacterial artificial chromosome
(BAC)–based physical map that encompasses this refined
DD region. The map consists of 35 YAC, 69 PAC, 16
BAC, and 2 cosmid clones that were ordered by mapping
54 anonymous sequence-tagged sites. The critical region
is estimated to be 2.4 Mb in size, with an average marker
resolution of 37.5 kb. The refinement of the critical interval
excludes the ALDH2, RPL6, PTPN11, and OAS
genes, as well as seven expressed sequence tags (ESTs)
previously mapped in the DD region. The three known
genes (ATP2A2, PPP1CC, and SCA2) and the 10 ESTs
mapped within the critical region are not obvious candidates
for the DD gene. Therefore, this detailed integrated
physical, genetic, and partial transcript map provides
an important resource for the isolation of the DD
gene and, possibly, other disease genes.

Original language	English
Pages (from-to)	890-903
Journal	American Journal of Human Genetics
Volume	62
Issue number	4
DOIs	https://doi.org/10.1086/301794
Publication status	Published - 22 Jan 1998

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Sakuntabhai, A., Monk, S., Carter, S. A., Bryce, S. D., Cox, R., Harrington, L., Levy, E., Ruiz-Perez, V. L., Katsantoni, E., Kodvawala, A., Munro, C. S., Burge, S., Larrègue, M., Nagy, G., Rees, J. L., Lathrop, M., Monaco, A. P., Strachan, T., & Hovnanian, A. (1998). Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region. American Journal of Human Genetics, 62(4), 890-903. https://doi.org/10.1086/301794

@article{19467f7d71ad46ee895096a7dec79d90,

title = "Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region",

abstract = "Darier disease (DD) (MIM 124200) is an autosomaldominant skin disorder characterized by loss of adhesionbetween epidermal cells and by abnormal keratinization.We present linkage analysis showing, in four families,key recombination events that refine the location of theDD locus on chromosome 12q23-24.1 to a region of!1 cM. We have constructed a YAC/P1 artificialchromosome (PAC)/bacterial artificial chromosome(BAC)–based physical map that encompasses this refinedDD region. The map consists of 35 YAC, 69 PAC, 16BAC, and 2 cosmid clones that were ordered by mapping54 anonymous sequence-tagged sites. The critical regionis estimated to be 2.4 Mb in size, with an average markerresolution of 37.5 kb. The refinement of the critical intervalexcludes the ALDH2, RPL6, PTPN11, and OASgenes, as well as seven expressed sequence tags (ESTs)previously mapped in the DD region. The three knowngenes (ATP2A2, PPP1CC, and SCA2) and the 10 ESTsmapped within the critical region are not obvious candidatesfor the DD gene. Therefore, this detailed integratedphysical, genetic, and partial transcript map providesan important resource for the isolation of the DDgene and, possibly, other disease genes.",

author = "Anavaj Sakuntabhai and Sarah Monk and Carter, {Simon A.} and Bryce, {Steven D.} and Roger Cox and Louise Harrington and Elaine Levy and Ruiz-Perez, {Victor L.} and Eleni Katsantoni and Ahmer Kodvawala and Munro, {Colin S.} and Susan Burge and Marc Larr{\`e}gue and Gyula Nagy and Rees, {Jonathan L.} and Mark Lathrop and Monaco, {Anthony P.} and Tom Strachan and Alain Hovnanian",

year = "1998",

month = jan,

day = "22",

doi = "10.1086/301794",

language = "English",

volume = "62",

pages = "890--903",

journal = "American Journal of Human Genetics",

issn = "0002-9297",

number = "4",

}

Sakuntabhai, A, Monk, S, Carter, SA, Bryce, SD, Cox, R, Harrington, L, Levy, E, Ruiz-Perez, VL, Katsantoni, E, Kodvawala, A, Munro, CS, Burge, S, Larrègue, M, Nagy, G, Rees, JL, Lathrop, M, Monaco, AP, Strachan, T & Hovnanian, A 1998, 'Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region', American Journal of Human Genetics, vol. 62, no. 4, pp. 890-903. https://doi.org/10.1086/301794

Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region. / Sakuntabhai, Anavaj; Monk, Sarah; Carter, Simon A. et al.
In: American Journal of Human Genetics, Vol. 62, No. 4, 22.01.1998, p. 890-903.

Research output: Contribution to journal › Article › peer-review

TY - JOUR

T1 - Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region

AU - Sakuntabhai, Anavaj

AU - Monk, Sarah

AU - Carter, Simon A.

AU - Bryce, Steven D.

AU - Cox, Roger

AU - Harrington, Louise

AU - Levy, Elaine

AU - Ruiz-Perez, Victor L.

AU - Katsantoni, Eleni

AU - Kodvawala, Ahmer

AU - Munro, Colin S.

AU - Burge, Susan

AU - Larrègue, Marc

AU - Nagy, Gyula

AU - Rees, Jonathan L.

AU - Lathrop, Mark

AU - Monaco, Anthony P.

AU - Strachan, Tom

AU - Hovnanian, Alain

PY - 1998/1/22

Y1 - 1998/1/22

N2 - Darier disease (DD) (MIM 124200) is an autosomaldominant skin disorder characterized by loss of adhesionbetween epidermal cells and by abnormal keratinization.We present linkage analysis showing, in four families,key recombination events that refine the location of theDD locus on chromosome 12q23-24.1 to a region of!1 cM. We have constructed a YAC/P1 artificialchromosome (PAC)/bacterial artificial chromosome(BAC)–based physical map that encompasses this refinedDD region. The map consists of 35 YAC, 69 PAC, 16BAC, and 2 cosmid clones that were ordered by mapping54 anonymous sequence-tagged sites. The critical regionis estimated to be 2.4 Mb in size, with an average markerresolution of 37.5 kb. The refinement of the critical intervalexcludes the ALDH2, RPL6, PTPN11, and OASgenes, as well as seven expressed sequence tags (ESTs)previously mapped in the DD region. The three knowngenes (ATP2A2, PPP1CC, and SCA2) and the 10 ESTsmapped within the critical region are not obvious candidatesfor the DD gene. Therefore, this detailed integratedphysical, genetic, and partial transcript map providesan important resource for the isolation of the DDgene and, possibly, other disease genes.

AB - Darier disease (DD) (MIM 124200) is an autosomaldominant skin disorder characterized by loss of adhesionbetween epidermal cells and by abnormal keratinization.We present linkage analysis showing, in four families,key recombination events that refine the location of theDD locus on chromosome 12q23-24.1 to a region of!1 cM. We have constructed a YAC/P1 artificialchromosome (PAC)/bacterial artificial chromosome(BAC)–based physical map that encompasses this refinedDD region. The map consists of 35 YAC, 69 PAC, 16BAC, and 2 cosmid clones that were ordered by mapping54 anonymous sequence-tagged sites. The critical regionis estimated to be 2.4 Mb in size, with an average markerresolution of 37.5 kb. The refinement of the critical intervalexcludes the ALDH2, RPL6, PTPN11, and OASgenes, as well as seven expressed sequence tags (ESTs)previously mapped in the DD region. The three knowngenes (ATP2A2, PPP1CC, and SCA2) and the 10 ESTsmapped within the critical region are not obvious candidatesfor the DD gene. Therefore, this detailed integratedphysical, genetic, and partial transcript map providesan important resource for the isolation of the DDgene and, possibly, other disease genes.

U2 - 10.1086/301794

DO - 10.1086/301794

M3 - Article

SN - 0002-9297

VL - 62

SP - 890

EP - 903

JO - American Journal of Human Genetics

JF - American Journal of Human Genetics

IS - 4

ER -

Sakuntabhai A, Monk S, Carter SA, Bryce SD, Cox R, Harrington L et al. Refined Genetic Mapping of the Darier Locus to a !1-cM Region of Chromosome 12q24.1, and Construction of a Complete, High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region. American Journal of Human Genetics. 1998 Jan 22;62(4):890-903. doi: 10.1086/301794