Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Keyphrases

• Recombinant 100%
• Phylogenetic Analysis 100%
• Whole Genome Sequencing 100%
• Recombination 100%
• Sequence Transfer 100%
• Genotype 50%
• Highly Accurate 50%
• Evolutionary Studies 50%
• Freely Available 50%
• Point mutation 50%
• Flexible Approach 50%
• Genome Sequencing 50%
• Processing Demands 50%
• Whole Genome Alignment 50%
• Iterative Algorithm 50%
• Accurate Reconstruction 50%
• Bacterial Genomes 50%
• Python 50%
• Maximum Likelihood Phylogeny 50%
• Spatial Scanning 50%
• Prokaryotic Chromosome 50%
• Linux Kernel 50%
• Parameterized Model 50%
• Sanger 50%
• Sequencing Technology 50%
• Bacterial Evolution 50%
• Recent Diversification 50%
• Mac OS X 50%
• Sequence Diversity 50%
• Evolutionary History 50%
• Base Substitution 50%
• Outbreak Analysis 50%
• GitHub 50%

Immunology and Microbiology

• Phylogeny 100%
• Evolution 100%
• Cladistics 100%
• Infectious Agent 50%
• Bacterial Genome 50%
• Point Mutation 50%
• Nucleic Acid Base Substitution 50%
• Pythonidae 50%

Biochemistry, Genetics and Molecular Biology

• Cladistics 100%